Metodi enzimatici in diagnostica clinica Enzymatic reaction-based assays Vantaggi -veloce -molto specifico Metodi di - Misura in continuo (più facili e più utili) - Misura a tempo fisso Influenze - pH - temperatura -forza ionica Michaelis-Menten enzyme kinetics Km Spesso non è possibile un singolo enzima-reazione sequenziale Eprim A Eind B X t ~ 0 [B] << KmB, vind = Vind.[B]/KmB C Y - 1st order reaction t > 0 k.[Eprim] = Vind vind = Vind.[B]/(KmB + [B]) = Vind/(KmB/[B] + 1) [B] 100.KmB - error 1% It is necessary to use 10 to 100-fold excess of Eind over Eprim!!! NAD(P)H assay - Wartburg optical test A + NADH + H+ H B + NAD+ O C + NH2 N NH2 O N CH2 O P O O N O O CH2 OH OH ox - 2 [H] red + 2 [H] H O C N O O H N - P O HO OH - NH2 N NH2 O N CH2 HO OH O P - O O P O N N O O CH2 N O O + H + OH OH Tutte le deidrogenasi NAD o NADP dipendenti utilizzano queso metodo Biochemistry 2/e - Garrett & Grisham Test ottico accoppiato A+B C+D C (oD) +NADH E + NAD+ E’ possibile accoppiare una terza reazione Biochemistry 2/e - Garrett & Grisham Calcolo attività enzimatica • 1 UI =1 micromole di substrato trasformato/min = c / min DA V 1000 • Attività enziamtica (mUI / ml) = min e v d DA = variazione assorbimento a 340 1000 = fattore di conversione alle mUI V = volume totale della miscela di reazione e = coeff. Estinzione molare di 1 mmole/ml di NADH a 340 6.22 cm2/mmole v = volume del campione (ml) d = cammino ottico (1cm) esempi NH4+ COO- COO- C O CH2 + NADH + NH4+ CH2 GLUTAMATE DEHYDROGENASE + NAD+ + H2O CH2 CH2 COO- COO- 2-OXOGLUTARATE CO2 HC NH2 L-GLUTAMATE COOC~ O P + CO2 + OH- PHOSPHOENOLPYRUVATE CARBOXYLASE COO- PHOSPHOENOLPYRUVATE OXALACETATE COOCH2 COOOXALACETATE C O CH2 CH2 C O COO- MALATE DEHYDROGENASE + NADH + H+ COOHC OH CH2 COOL-MALATE + NAD+ NO3NO3- + NADPH + H+ NITRATE REDUCTASE NO2- + NADP+ + H2O H2 O2 H2O2 + LEUCODYE PEROXIDASE DYE + H2O SO32SO32- + O2 + H2O H2O2 + NADH + H+ SULFITE OXIDASE NADH-PEROXIDASE SO42- + H2O2 2 H2O + NAD+ Ethanol, Acetaldehyde ETHANOL + NAD+ ALCOHOL DEHYDROGENASE ACETALDEHYDE + NADH + H+ ACETALDEHYDE + NAD+ + H2O ALDEHYDE DEHYDROGENASE ACETIC ACID + NADH + H+ Acetate ACETYL-CoA SYNTHASE ACETATE + ATP + CoA ACETYL-CoA + P CH2 ACETYL-CoA + OXALACETATE + H2O CITRATE SYNTHASE COOCOO- HO CH2 COO- CITRATE MALATE DEHYDROGENASE MALATE + NAD+ P OXALACETATE + NADH + H+ + CoA Ascorbate 1 O L- ASCORBATE OH OH PMS O O CH2OH C OH OH + MTT O O H C CH2OH H O O + MTT- FORMAZANE + H+ MTT = 3 -(4,5 -DIMETHYLTHIAZOLYL-2)-2,5- DIPHENYLTETRAZOLIUM BROMIDE PMS = 5- METHYLPHENAZINIUM BROMIDE FORMAZANE N N R1 N R2 N N R3 O + X- O 2 + 2 H+ -2 H+ R1 N N H N R2 R3 + HX RED 578 nm BLANK L-ASCORBATE + O2 ASCORBATE OXIDASE DEHYDROASCORBATE + H2O2 PYRUVATE + CO2 Citrate CITRATE LYASE CITRATE OXALACETATE + NADH + H+ PYRUVATE + NADH + H OXALACETATE + ACETATE MALATE DEHYDROGENASE L-LACTATE DEHYDROGENASE L-MALATE + NAD+ L-LACTATE + NAD+ Malate MALATE DEHYDROGENASE OXALACETATE + NADH + H+ L-MALATE + NAD+ OXALACETATE + L-GLUTAMATE Fumarate ASPARTATE AMINOTRANSFERASE CH -OOC CH COO+ H2O L-ASPARTATE + 2-OXOGLUTARATE FUMARASE L-MALATE Oxalate, Formiate OXALATE DECARBOXYLASE OXALATE FORMIATE + NAD+ +H2O FORMIATE + CO2 FORMIATE DEHYDROGENASE HCO32- + NADH + H+ O Succinate H N N N N CH2 COO+ CH2 P CH2 O P P COO- SUCCINATE SUCCINYL-CoA SYNTHASE SUCCINYL-CoA + IDP + Pi + CoA ITP OH OH OXALATE DECARBOXYLASE OXALATE FORMIATE + NAD+ +H2O FORMIATE + CO2 FORMIATE DEHYDROGENASECOOH HCO32- + NADH + H+ IDP + PHOSPHOENOLPYRUVATE PYRUVATE KINASE O C + ITP CH3 PYRUVATE L-LACTATE DEHYDROGENASE PYRUVATE + NADH + H+ COOHO H CH3 L-LACTATE + NAD+ Lactate LACTATE DEHYDROGENASE PYRUVATE + NADH + H+ L-LACTATE + NAD+ PYRUVATE + L-GLUTAMATE ALANINE AMINOTRANSFERASE L-ALANINE + 2-OXOGLUTARATE Pyruvate PYRUVATE + NADH + H+ L-LACTATE DEHYDROGENASE L-LACTATE + NAD+ 2-Oxoglutarate 2-OXOGLUTARATE + NADH + NH4+ GLUTAMATE DEHYDROGENASE L-GLUTAMATE + NAD+ + H2O L-Glutamate GLUTAMATE DEHYDROGENASE L-GLUTAMATE + NAD+ 2-OXOGLUTARATE + NADH + NH4+ +H2O NADH + IODONITROTETRAZOLIUM CHLORIDE + H+ DIAPHORASE NAD+ + FORMAZAN DYE L-Glutamine L-GLUTAMINE + H2O GLUTAMINASE L-GLUTAMATE + NH3 Glucose -D-GLUCOSE H2C GLUCOSE OXIDASE + H2O + O2 OH GLUCONOLACTON + H2O2 H2C O-P O + O HEXOKINASE ATP -D-GLUCOSE + ADP -D-GLUCOSE-6-PHOSPHATE -D-GLUCOSE-6-PHOSPHATE DEHYDROGENASE H2C O-P -D-GLUCOSE-6-PHOSPHATE + NADP+ O + O + NADPH + H GLUCONOLACTON-6-PHOSPHATE Sucrose SUCROSE + H2O SACCHARASE -D-GLUCOSE + -D-FRUCTOSE Fructose -D-FRUCTOSE + ATP HEXOKINASE -D-FRUCTOSE-6-PHOSPHATE -D-FRUCTOSE-6-PHOSPHATE + ADP PHOSPHOGLUCO ISOMERASE -D-GLUCOSE-6-PHOSPHATE Glycerol H2C OH HC OH + ATP GLYCEROL KINASE L-GLYCEROL-3-PHOSPHATE + ADP H2C OH PYRUVATE KINASE PYRUVATE + ATP ADP + PHOSPHOENOLPYRUVATE PYRUVATE + NADH + H+ L-LACTATE DEHYDROGENASE L-LACTATE + NAD+ Triacylglycerols LIPASE, ESTERASE GLYCEROL + 3x FATTY ACID TRIACYLGLYCEROLS + 3 H2O Free fatty acids ACYL-CoA SYNTHASE FATTY ACID + CoA + ATP ACYL-CoA + O2 ACYL-CoA OXIDASE AMP + ACYLCoA + P-P ENOYL-CoA + H2O2 H2O2 + 4-AMINOANTIPYRINE + 2,4,6-TRIBROMO-3-HYDROXYBENZOIC ACID PEROXIDASE RED DYE + 2 H2O + HBr 546 nm Cholesterol HO CHOLESTEROL + O2 METHANOL + H2O2 CHOLESTEROL OXIDASE CATALASE 4-CHOLESTENON + H2O2 FORMALDEHYDE + 2 H2O FORMALDEHYDE + NH4+ + 2 ACETYLACETONE 3,5-DIACETYL-1,4-DIHYDROLUTIDINE + 3 H2O 405 nm Bile acids 3--HYDROXY-BILE ACID + NAD+ 3--HYDROXYSTEROID DEHYDROGENASE NADH + H+ + NITROBLUE TETRAZOLIUM CHLORIDE 3-OXO-BILE ACID + NADH + H+ DIAPHORASE NAD+ + FORMAZAN 576 nm Urea UREA + H2O UREASE 2-OXOGLUTARATE + NADH + NH4+ 2 NH3 + CO2 GLUTAMATE DEHYDROGENASE L-GLUTAMATE + NAD+ + H2O AMP/ADP AMP + ATP MYOKINASE 2ADP ADP + PHOSPHOENOLPYRUVATE PYRUVATE + NADH + H+ PYRUVATE KINASE L-LACTATE DEHYDROGENASE ATP + PYRUVATE L-LACTATE + NAD+ ATP GLYCEROL-3-PHOSPHATE + ATP 3-PHOSPHOGLYCERATE KINASE GLYCERATE-1,3-DIPHOSPHATE + NADH + H+ GLYCERALDEHYDE-3-PHOSPHATE GLYCERATE-1,3-DIPHOSPHATE + ADP GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE TRIOSE PHOSPHATE ISOMERASE DIHYDROXYACETONE-3-PHOSPHATE + NADH + H+ GLYCERALDEHYDE-3-PHOSPHATE + NAD+ + Pi DIHYDROXYACETONE-3-PHOSPHATE GLYCEROL-3-PHOSPHATE DEHYDROGENASE GLYCEROL-3-PHOSPHATE + NAD+ NAD(P)H - bioluminescence NAD(P)H + H+ + FMN FMNH2 + RCHO + O2 FMN-REDUCTASE LUCIFERASE BACTERIAL NAD(P)+ + FMNH2 FMN + RCOOH + h. (493 nm) Metodi in luminescenza ATP - bioluminescence ATP + D-LUCIFERIN + O2 LUCIFERASE FIREFLY OXYLUCIFERIN + 2 Pi + AMP + CO2 + h. (562 nm) Biochemistry 2/e - Garrett & Grisham Diagnostica nell’ischemia cardiaca Transaminasi glutamico ossalacetica (GOT) MALATE DEHYDROGENASE OXALACETATE + NADH + H+ L-MALATE + NAD+ OXALACETATE + L-GLUTAMATE ASPARTATE AMINOTRANSFERASE L-ASPARTATE + 2-OXOGLUTARATE GOT aumenta dopo 6 ore l’infarto max a 36 ore livelli normali 5gg Biochemistry 2/e - Garrett & Grisham Creatina fosfato Fosfocreatina + ADP H2C creatina + ATP OH • Creatina chinasi O + HEXOKINASE ATP -D-GLUCOSE H2C O-P O + ADP -D-GLUCOSE-6-PHOSPHATE -D-GLUCOSE-6-PHOSPHATE DEHYDROGENASE -D-GLUCOSE-6-PHOSPHATE + NADP+ H2C O-P O + O + NADPH + H GLUCONOLACTON-6-PHOSPHATE Aumenta dopo 3 ore dall’infarto max 24-30 h livelli normali 3gg Biochemistry 2/e - Garrett & Grisham Lattico deidrogenasi LACTATE DEHYDROGENASE PYRUVATE + NADH + H+ L-LACTATE + NAD+ PYRUVATE + L-GLUTAMATE ALANINE AMINOTRANSFERASE Aumento entro 2 ore L-ALANINE + 2-OXOGLUTARATE max 60 ore ritorno alla norma lento Troponine cardiache: molto specifiche per il cuore Biochemistry 2/e - Garrett & Grisham Dosaggio del substrato • • • 10 ml di NADH 20 mM (Ci) vengono messi in 2 ml di soluzione tampone (CfNADH = 100 µM) 10 ml di piruvato prelevati dal liquido biologico (siero) 10 ml di lattico deidrogenasi • Piruvato + NADH + H+ • • • Sapendo che l’e molare di NADH è 6,22 mM-1 cm-1 0,1 mM di NADH avrà un assorbanza di 0,622 (Ai) Nella lettura Af ottengo: 0,322 DA = elDC DA = 0,622 – 0,322 = 0.3 DC = DA/el = 0.3 / 6,22 mM-1 cm-1 x cm = 0,48 mM = 48 mM • • • Le micromoli di piruvato nei 2 ml della cuvetta saranno uguali a 48 mM x 2 ml / 1000 = 0, 096 mmoli [piruvato] = 0,096 / 10 ml (volume usato) = 9,6 mM (concentrazione del piruvato) • lattato + NAD+