THURSDAY)SEPTEMBER)10
08:30
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18:20
FRIDAY)SEPTEMBER)11
REGISTRATION
SATURDAY)SEPTEMBER)12
REGISTRATION
WELCOME
INVITED)SPEAKER)(40)minutes)
Wessel)Van)Wieringen
INVITED)SPEAKER)(40)minutes)
Dirk)Husmeier
INVITED)SPEAKER)(40)minutes)
Dario)Greco
CONTRIBUTED3TALKS3
(33X3203minutes)
CONTRIBUTED3TALKS3
(33X3203minutes)
CONTRIBUTED3TALKS3
(23X3203minutes)
Causeur3(18)
Kavak3(2)
Masseroli3(5)
Russo3(21)
Rizzo3(25)
Lecca3(23)
Mencar3(4)
Abdeddaim3(11)
COFFEE,BREAKS,(40,minutes)
COFFEE,BREAKS,(40,minutes)
REGISTRATION
COFFEE,BREAKS,(40,minutes)
SHORT3CONTRIBUTED3TALKS3
(23X3103minutes):3Evangelista3(22)3+3Alssraj3(8)
INTRO3GUEST3(103minutes)
Special,Guest
Ada,Yonath,(Nobel,Laureate,in,Chemistry)
(1#h)
SPECIAL)SESSION)(Knowledge)
(5X203minutes)
Joshi3(27)
De3Beats3(29)
Amoutzias3(32)
Giotti3(31)
Sibanda3(19)
INVITED)SPEAKER)(40)minutes)
Michele)Ceccarelli
General)Chair)talk:(40)minutes))
Erik)BongcamPRudloff
LUNCH,(1:30,h)
LUNCH,(1:30,h)
LUNCH,(1:30,h)
INVITED)SPEAKER)(40)minutes)
Daniel)Yekutieli
INVITED)SPEAKER)(40)minutes)
Cinzia)Viroli
CONTRIBUTED3TALKS3
(23X3203minutes)
Carissimo3(26)
Kurpas3(20)
SHORT3CONTRIBUTED3TALKS
(23X3103minutes):3Eleuteri3(7)+Tripathi3(15)3
SPECIAL)SESSION)(Regularization)
(403minutes)
Chiquet)(invited)
External3Short3talk
SHORT3CONTRIBUTED3TALKS3
(53X3103minutes):
Weitschek3(9)+Lo3Bosco3(16)+
Del3Prete3(10)+Dubey3(12)3+3Daberdaku3(6)
SPECIAL)SESSION)(Metabolomics)
(4X203minutes3+33x10)
Angione3(46)
Starcevic3(43)
Telatin3(44)
COFFEE,BREAKS,(30,minutes)
COFFEE,BREAKS,(30,minutes)
COFFEE,BREAKS,(30,minutes)
SPECIAL)SESSION)(EDGE)
(5X203minutes)
Desmedt3(35)
Alberti3(37)
Demicheli3(38)
Marano3(39)
Libutti3(36)
Closing3day
SPECIAL)SESSION)(HPC)
(4X203minutes)
Fabio3Tordini3(30)
Goutam3Saha3(13)
Andrea3Tangherloni3(33)
Ivan3Merelli3(28)
SPECIAL)SESSION)(Metabolomics))continuation
Fondi3(40)
Can3(45)
Chiappori3(42)
De3Pascale3(41)
Closing3remarks
Closing3day
Discussion)about)CIBB2016)edition)
(303minutes)
Closing3day
THURSDAY)SEPTEMBER)10
08:30
09:00
09:10
09:20
09:30
09:40
09:50
10:00
10:10
10:20
10:30
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10:50
11:00
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12:00
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14:00
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16:30
16:40
16:50
17:00
17:10
17:20
17:30
17:40
17:50
18:00
18:10
18:20
Speaker
Talk)Title
Dario)Greco
Computational+challenges+in+systems+nanotoxicology+
SESSION)CHAIR
REGISTRATION
WELCOME
INVITED)SPEAKER)(40)minutes)
Valerio)Costa
CONTRIBUTED4TALKS4
(24X4204minutes)
David)Causeur)(18)
Signal+identification+in+ERP+data+by+decorrelated+Higher+Criticism+Thresholding
Pinar)Kavak)(2)
Improving+genome+assemblies+using+multi?platform+sequence+data
Daniela)Evangelista)(22)
Reem)Alssraj)(8)
PrimatesDB:4a4functional4resource4on4skeletal4muscle4tissue4specific4transcriptome4of4the4Pan4troglodytes
WellRsupported4phylogenies4using4largest4subsets4of4coreRgenes4by4discrete4particle4swarm4optimization
COFFEE,BREAKS,(40,minutes)
SHORT4CONTRIBUTED4TALKS4
(24X4104minutes)
INTRO4GUEST4(104minutes)
Riccardo)Rizzo
IBP
Special,Guest
Ada,Yonath,(Nobel,Laureate,in,Chemistry)
(1+h)
Ada,Yonath,(Nobel,Laureate,in,Chemistry)
+Species?specific+antibiotics+and+the+microbiome
INVITED)SPEAKER)(40)minutes)
Daniel)Yekutieli
Bayesian+FDR+controlling+test+procedures.
CONTRIBUTED4TALKS4
(24X4204minutes)
Annamaria)Carissimo)(26)
Validation+Of+Community+Robustness
Monika)Kurpas)(20)
A+simulation+study+of+the+relationship+between+replication+stress+detection+pathway+and+the+cell+cycle
Antonio)Eleuteri)(7)
Kumar)ParijatTripathi)(15)
A+commentary+on+a+censored+regression+estimator
Comparison+of+gene+expression+signature+using+rank+based+statistical+inference
LUNCH,(1:30,h)
SHORT4CONTRIBUTED4TALKS
(24X4104minutes)
Italia)De)Feis
Riccardo)Rizzo
COFFEE,BREAKS,(30,minutes)
SPECIAL)SESSION)(EDGE)
(5X204minutes)
Closing4day
Desmedt)(35)
Dissecting+the+biological+complexity+of+breast+cancer
Alberti)(37)
Transcriptomic+analysis+of+the+Trop?2+metastatic+program
Demicheli)(38)
Cancer+Images:+from+invading+hordes+to+pseudo?organ+structures.
Marano)(39)
Assessment+of+the+robustness+of+Bayesian+P?spline+estimation+techniques+for+prognostic+assessment+and+prediction
Libutti)(36)
New+Techs+and+oncology+in+System+Medicine
Closing4day
Closing4day
Elia)Biganzoli)e)Clelia)Di)Serio
Closing4day
08:30
09:00
09:10
09:20
09:30
09:40
09:50
10:00
10:10
10:20
10:30
10:40
10:50
11:00
11:10
11:20
11:30
11:40
11:50
12:00
12:10
12:20
12:30
12:40
12:50
13:00
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13:40
13:50
14:00
14:10
14:20
14:30
14:40
14:50
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15:20
15:30
15:40
15:50
16:00
16:10
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17:00
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18:00
18:10
18:20
FRIDAY'SEPTEMBER'11
REGISTRATION
Speaker
Talk'Title
Session'Chair
Paola'Rancoita
INVITED'SPEAKER'(40'minutes)
CONTRIBUTED3TALKS3
(33X3203minutes)
Wessel'Van'Wieringen
Ridge&estimation&of&multiple&GGM,&simultaneously&and&integratively
Marco'Masseroli'(5)
Validation&Procedures&for&Predicted&Gene&Ontology&Annotations
Francesco'Russo'(21)
A&walking&tour&in&Reproducible&Research&and&Big&Data&Management&with&RNASeqGUI&and&R
Riccardo'Rizzo'(25)
A&deep&learning&approach&to&DNA&sequence&classification:&first&results
Anagha'Joshi'(27)
&Transcription&control&in&human&cell&types&by&systematic&analysis&of&ChIP&sequencing&data&from&the&ENCODE
Leen'De'Baets'(29)
Novel&unsupervised&learning&methods&for&single&cell&data&visualization&and&trajectory&inference
Grigorios'Amoutzias(32)'
&Phosphoproteomics:&A&critical&view&through&the&bioinformatics&lens
COFFEE,BREAKS,(40,minutes)
SPECIAL'SESSION'(Knowledge)
(5X203minutes)
Bruno'Giotti'(31)
MetaManalysis&of&human&cell&cycleMassociated&transcripts&using&published&data
Wilbert'Sibanda'(19)
DMOptimal&Designs:&Differences&in&HIV&risk&profiles&between&Gen&X&black&women&and&entire&population&of&black&women&attending&antenatal&clinics&in&South&Africa
INVITED'SPEAKER'(40'minutes)
Cinzia'Viroli
Modeling&overdispersion&heterogeneity&in&differential&expression&analysis&using&mixtures
SPECIAL'SESSION'(Regularization)
(403minutes)
Chiquet'(invited)
Fast&tree&inference&with&weighted&fusion&penalties
External3Short3talk
Asli'Ismihan'Ozen
NGS&data&analysis&with&XploreRNA
Anagha'Joshi'and'Tom'Michoel
LUNCH,(1:30,h)
Daniel'Yekutieli
Frank'Picard
To'be'defined
COFFEE,BREAKS,(30,minutes)
SPECIAL'SESSION'(HPC)
(4X203minutes)
Fabio'Tordini'(30)
nuChaRt:&embedding&High&Performance&Computing&in&R&for&augmented&DNA&Exploration
Goutam'Saha'(13)
A&novel&technique&for&reduction&of&false&positives&in&predicted&gene&regulatory&networks
Andrea'Tangherloni'(33)
Ivan'Merelli'(28)
Discussion'about'CIBB2016'edition'
(303minutes)
Closing3day
Ivan'Merelli
Deterministic&simulations&of&largeMscale&models&of&cellular&processes&accelerated&on&graphics&processing&units
An&HadoopMbased&algorithm&for&clustering&Protein&Structures
Roberto'Tagliaferri;'Elia'Biganzoli;'Clelia'Di'Serio
08:30
09:00
09:10
09:20
09:30
09:40
09:50
10:00
10:10
10:20
10:30
10:40
10:50
11:00
11:10
11:20
11:30
11:40
11:50
12:00
12:10
12:20
12:30
12:40
12:50
13:00
13:10
13:20
13:30
13:40
13:50
14:00
14:10
14:20
14:30
14:40
14:50
15:00
15:10
15:20
15:30
15:40
15:50
16:00
16:10
16:20
16:30
16:40
16:50
17:00
17:10
17:20
17:30
17:40
SATURDAY(SEPTEMBER(12
REGISTRATION
Speaker
Talk(Title
INVITED(SPEAKER((40(minutes)
Dirk(Husmeier
Bayesian(inference(of(antigenic(sites(in(viral(evolution.
CONTRIBUTED3TALKS3
(33X3203minutes)
Paola(Lecca((23)
Identifying(modules(in(biological(networks(with(WG<Clusters.(
Corrado(Mencar((4)
Managing(NGS(differential(expression(uncertainity(with(fuzzy(sets
Said(Abdeddaim((11)
Supervised(term(weights(for(biomedical(text(classification
INVITED(SPEAKER((40(minutes)
Michele(Ceccarelli
Integrative(Molecular(Analysis(Across(Adult(Glioma:(Novel(Relationships(Between(Histological(Subtypes(and(Molecular(Signatures.
General(Chair(talk:(40(minutes)(
Erik(BongcamPRudloff
Challenges(in(the(annotation(of(NGS(data.
Emanuel(Weitschek((9)
Giosuè(Lo(Bosco((16)
Eugenio(Del(Prete((10)
Amit(Dubey((12)
Sebastiam(Daberdaku((6)
Claudio(Angione((46)
Antonio(Starcevic((43)
LAF(Barcoding:(classifying(DNA(Barcode(multi<locus(sequences(with(feature(vectors(and(supervised(approaches
Alignment(free(dissimilarities(for(sequence(classification
A(workflow(for(the(comparative(analysis(of(MALDI<TOF(mass(spectrometric(data(in(proteomics
Ethno<pharmacology(Based(In(Silico(Approach(Tracing(Chymase(Inhibitors(from(Herbal(Nutraceutical(Resources
A(voxel<based(tool(for(protein(surface(representation
Measuring(adaptation(to(extreme(environments(with(a(multi<omic(approach
Proteome(semantics(–(application(of(natural(language(processing(to(peptide(mass(fingerprinting
Andrea(Telatin((44)
SNP<SHOT:(integrating(annotation(sources(for(target(enrichment(experiments
Marco(Fondi((40)
Modelling(metabolic(adaptation(to(cold(shock(and(substrate(switching
Basarbatu(Can((45)
Comparative(Analysis(of(Differentially(Expressed(Pathways(in(Mouse(with(ALS
Federica(Chiappori((42)
Donatella(De(Pascale((41)
Psychrophilic(protein(modeling
Antimicrobial(compounds(from(Antarctic(bacteria
Chair
To(be(decided
COFFEE,BREAKS,(40,minutes)
Roberto(Tagliaferri
LUNCH,(1:30,h)
SHORT3CONTRIBUTED3TALKS3
(53X3103minutes):
SPECIAL(SESSION((Metabolomics)
(4X203minutes3+33x10)
Angelo(Facchiano
Claudio(Angione
COFFEE,BREAKS,(30,minutes)
SPECIAL(SESSION((Metabolomics)(continuation
Closing3remarks
Closing3day
Claudio(Angione